The Farnham Laboratory

Supplementary Data

New! Datasets (sets of predicted binding sites) from Bieda et al. (2006) (contact Mark Bieda for additional conditions)

Note: These are primers to use for PCR after chromatin immunoprecipitation for common, validated E2F targets.

E2F6 negatively regulates BRCA1 in human cancer cells without methylation of histone H3 on Lysine 9.

Oberley M.J., Inman D.R., Farnham P.J. JBC, 278: 42466-76, 2003.

CpG Island Sequences

Primer Sequences


Identification of novel pRb binding sites using CpG microarrays suggests that E2F recruits pRb to specific genomic sites during S phase.

Wells et al. Oncogene, (22) 2003.

Myc recruits P-TEFb to mediate the final step in the transcriptional activation of the cad promoter

Eberhardy, S.E. and P.J. Farnham. JBC, (277) 2002.

The identification of E2F1-specific target genes.

Wells, J.W., Graveel, C.R., Bartley, S.M., Madore, S.J., and Farnham, P.J. PNAS, (99), 3890-3895, 2002.

Weinmann, A.S., Yan, P.S., Oberley, M.J, Huang, T.H., and Farnham, P.J. Genes and Development, (16), 235-244, 2002.

Eberhardy, S.R. and Farnham, P.J. Journal of Biological Chemistry, (276), 48562-48571, 2001.


Weinmann, A.S., Bartley, S.M., Zhang, T., Zhang, M.Q., and Farnham, P.J. Molecular and Cellular Biology, (21), 6820-6832, 2001.

Expression profiling and identification of novel genes in hepatocellular carcinomas

Graveel, C.R., Jatkoe, T., Madore, S.J., Holt, A.L., and Farnham, P.J. Oncogene (20), 2704-2712, 2001.