Supplemental Data for

Weinmann, A.S., Yan, P.S., Oberley, M.J, Huang, T.H., and Farnham, P.J. Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis. Genes and Development, (16), 2002.

 

Common Sequence Elements

Excel file

 

Promoter 10 bp direct repeat 9 bp dyad 18 bp element
  CCTCNNCCTC CCAG(G/C)CTGG CCTGTAATCCCAGCACTT
TTK CCTCTGCCTC CCAGGCTGG CCTGTAATCCCAGCACTT *R
TYMS CCTCAGCCTC CCAGGCTGG CCTGTAATCCTAGTACTT *R
similar to FLJ10891 CCTCTGCCTC CCAGCCTGG CCTGTAATCCTAGCTACT
CpG12B10 CCTCTGCCTC CCAGGCTGG CCTGTAATCCCAGCACTT *R
SAAS CCGCAGCCTC CCAGCCTGG CCTGTAATCCCAGCACTT
GTF2H4 CCTCGGCCTC CCAGGCTGG CCTGTAATCCTAGCACTT *R
CDC25C CCTCAGCCTC CCAGGCTGG CCTGTAATCCCAGCACTT *R
H2AFM CCTCGGCCTC CCAGACTGG CCCGTAATACCAGCACTT *R
FLJ12973 CCTCAGCCTC CCAGGCTGG CCTGTAATCCTAAGCACT *R
FLJ12758 CCTCAGCCTC CCAGGCTGG CCTGTAATCCCACTTACT *R
ESTs CCTCGGCCTC CCAGGCTGG CCTATAATCCCACCTACT *R